Intent to Sole Source- HiFi PacBio Library Prep and Sequencing
ID: SSJ UW 07162024
• State: Washington
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Description
Background
The University of Washington (UW) is collaborating with Washington Sea Grant (WSG) and the Washington Department of Fish and Wildlife (WDFW) to conduct genome sequencing and research aimed at improving control and eradication efforts for the European green crab (Carcinus maenas). This initiative is funded by a $174,000 state general fund appropriation as part of the 2023-2025 fiscal biennium supplemental operating budget, effective from July 1, 2024, to June 30, 2025. The goal is to achieve a chromosome-scale, haplotype-resolved de novo genome assembly for the European green crab.
Work Details
Cantata Biosciences, Inc. will perform chromosome-scale, haplotype-resolved de novo genome assembly for the European green crab. The work will utilize both long-read PacBio HiFi sequencing and short-read Omni-C sequencing to produce a highly complete HiRise genome assembly. Deliverables include:
- A chromosome-scale, haplotype-resolved de novo HiRise genome assembly
- Topologically Associating Domains analysis
- Annotation data including a .gff file along with predicted gene coding sequences (CDS) and protein sequences.
Cantata is uniquely qualified as they are the only commercial entity providing this service and hold the patent for the Omni-C approach necessary for this project.
Period of Performance
The contract will commence on March 30, 2025, and is expected to last for nine months.
Place of Performance
The work will be performed at Cantata Biosciences' facilities located at 100 Barber Avenue, Worcester, MA 01606.
The University of Washington (UW) is collaborating with Washington Sea Grant (WSG) and the Washington Department of Fish and Wildlife (WDFW) to conduct genome sequencing and research aimed at improving control and eradication efforts for the European green crab (Carcinus maenas). This initiative is funded by a $174,000 state general fund appropriation as part of the 2023-2025 fiscal biennium supplemental operating budget, effective from July 1, 2024, to June 30, 2025. The goal is to achieve a chromosome-scale, haplotype-resolved de novo genome assembly for the European green crab.
Work Details
Cantata Biosciences, Inc. will perform chromosome-scale, haplotype-resolved de novo genome assembly for the European green crab. The work will utilize both long-read PacBio HiFi sequencing and short-read Omni-C sequencing to produce a highly complete HiRise genome assembly. Deliverables include:
- A chromosome-scale, haplotype-resolved de novo HiRise genome assembly
- Topologically Associating Domains analysis
- Annotation data including a .gff file along with predicted gene coding sequences (CDS) and protein sequences.
Cantata is uniquely qualified as they are the only commercial entity providing this service and hold the patent for the Omni-C approach necessary for this project.
Period of Performance
The contract will commence on March 30, 2025, and is expected to last for nine months.
Place of Performance
The work will be performed at Cantata Biosciences' facilities located at 100 Barber Avenue, Worcester, MA 01606.
Overview
Opportunity ID
SSJ UW 07162024
Version
1
Response Deadline
Sept. 18, 2024
Past Due
Date Posted
July 25, 2024
Source
Source Notes
Source does not have a linkable page for this opportunity. To find the opportunity, go to the Source website listed above and search for the Opportunity ID.
Est. Value Range
Experimental
$150,000 - $200,000
(AI estimate)
Agency Distribution
High
On 7/25/24 University of Washington in Washington issued Intent to Sole Source- HiFi PacBio Library Prep and Sequencing with ID SSJ UW 07162024 due 9/17/24.
Contacts
Documents
Posted documents for Intent to Sole Source- HiFi PacBio Library Prep and Sequencing
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AI Analysis
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Additional Details
System Identifier
53930
Codes
495-25 - Biology Specimens and Cultures (Except Microbial)495-30 - Botany Specimens495-97 - Recycled Biology, Botany, Geology, Microbiology and Zoology Equipment and Supplies495-95 - Zoology Specimens, Live and Injected
Counties
Adams, Asotin, Benton, Chelan, Clallam, Clark, Columbia, Cowlitz, Douglas, Ferry, Franklin, Garfield, Grant, Grays Harbor, Island, Jefferson, King, Kitsap, Kittitas, Klickitat, Lewis, Lincoln, Mason, Okanogan, Pacific, Pend Oreille, Pierce, San Juan, Skagit, Skamania, Snohomish, Spokane, Stevens, Thurston, Wahkiakum, Walla Walla, Whatcom, Whitman, Yakima