U24HG012212

Gene Ontology Consortium and Knowledgebase - Project Summary/Abstract

Because of the staggering complexity of biological systems, biomedical research is becoming increasingly dependent on knowledge stored in a computable form. The Gene Ontology (GO) is by far the largest knowledgebase of how genes function and has become a critical component of the computational infrastructure enabling the genomic revolution.

The GO knowledgebase encodes a computational model of biological systems using modern semantic technologies, and this is the key to its broad adoption and application. It stores vastly more knowledge than one person can know and therefore enables computational analyses that would otherwise be impossible. It has become indispensable in the interpretation of large-scale molecular measurements in biological research.

Crucially for human health research, GO is also one of a suite of complementary ontologies constructed in such a way to maximally promote interoperability and comparability of data sets. It represents the gene functions and biological processes that can be perturbed in human disease, helping researchers or clinicians to identify genetic contributions to disease.

GO is a knowledgebase that can be statistically mined, either standalone or in combination with data from other knowledge resources, which enables researchers to discover connections and form new hypotheses from the biological networks GO represents. All knowledge in GO is represented using semantic web technologies and so is amenable to computational integration and consistency checking.

To ensure the knowledge environment meets the requirements of biomedical researchers, we will:

1) Develop and refine the Gene Ontology to reflect current biological knowledge.
2) Coordinate, integrate, and provide GO assertions from multiple sources.
3) Enhance usability of the GO resources for multiple research communities.

We will extend the reach of our consortium of contributors to efficiently expand the content of the knowledgebase and develop test sets and challenges to spur the development of machine learning methods for knowledge capture. Our aims reflect the essential requirements for realizing the overarching objectives for a biomedical knowledgebase: efficiently capturing and integrating biological knowledge and adhering to the highest possible standard for accuracy and detail; constructing and providing a robust, flexible, powerful, and extensible technological infrastructure available not only for internal use but just as easily by the wider community; and lastly, leveraging state-of-the-art social media, web services, and other technologies to disseminate the GO resource to the entire biomedical research community.

University Of Southern California

NHGRI SUPPORTS THE DEVELOPMENT OF RESOURCES AND TECHNOLOGIES THAT WILL ACCELERATE GENOME RESEARCH AND ITS APPLICATION TO HUMAN HEALTH AND GENOMIC MEDICINE. A CRITICAL PART OF THE NHGRI MISSION CONTINUES TO BE THE STUDY OF THE ETHICAL, LEGAL AND SOCIAL IMPLICATIONS (ELSI) OF GENOME RESEARCH. NHGRI ALSO SUPPORTS THE TRAINING AND CAREER DEVELOPMENT OF INVESTIGATORS AND THE DISSEMINATION OF GENOME INFORMATION TO THE PUBLIC AND TO HEALTH PROFESSIONALS. THE SMALL BUSINESS INNOVATION RESEARCH (SBIR) PROGRAM IS USED TO INCREASE PRIVATE SECTOR COMMERCIALIZATION OF INNOVATIONS DERIVED FROM FEDERAL RESEARCH AND DEVELOPMENT, TO INCREASE SMALL BUSINESS PARTICIPATION IN FEDERAL RESEARCH AND DEVELOPMENT, AND TO FOSTER AND ENCOURAGE PARTICIPATION OF SOCIALLY AND ECONOMICALLY DISADVANTAGED SMALL BUSINESS CONCERNS AND WOMEN-OWNED SMALL BUSINESS CONCERNS IN TECHNOLOGICAL INNOVATION. THE SMALL BUSINESS TECHNOLOGY TRANSFER (STTR) PROGRAM IS USED TO FOSTER SCIENTIFIC AND TECHNOLOGICAL INNOVATION THROUGH COOPERATIVE RESEARCH AND DEVELOPMENT CARRIED OUT BETWEEN SMALL BUSINESS CONCERNS AND RESEARCH INSTITUTIONS, TO FOSTER TECHNOLOGY TRANSFER BETWEEN SMALL BUSINESS CONCERNS AND RESEARCH INSTITUTIONS, TO INCREASE PRIVATE SECTOR COMMERCIALIZATION OF INNOVATIONS DERIVED FROM FEDERAL RESEARCH AND DEVELOPMENT, AND TO FOSTER AND ENCOURAGE PARTICIPATION OF SOCIALLY AND ECONOMICALLY DISADVANTAGED SMALL BUSINESS CONCERNS AND WOMEN-OWNED SMALL BUSINESS CONCERNS IN TECHNOLOGICAL INNOVATION.

93.859 - Biomedical Research and Research Training

National Human Genome Research Institute (NHGRI) [HHS - NIH]

National Institute of General Medical Sciences (NIGMS) [HHS - NIH]

Los Angeles, California 900323649 United States

Single Zip Code

Biomedical Knowledgebase (U24 - Clinical Trials Not Allowed) (PAR-20-097)

Amendment Since initial award the total obligations have increased 334% from $2,191,381 to $9,501,474.