R35CA253127
Project Grant
Overview
Grant Description
Molecular and Cellular Regulation of Pre-Leukemic Stem Cells and Their Therapeutic Targeting - Abstract
Clinical outcome in MDS and AML has not significantly improved over the past 50 years, and cure rates remain below 15% in the majority of patients (~85%) who are over 55 years of age. Fundamentally novel approaches are urgently needed to improve our understanding of disease pathogenesis and to enable more effective therapeutic intervention.
Evidence over the past 10 years has shown that MDS and AML arise from preleukemic stem cells (prel-SC), preceding the formation of fully transformed leukemia stem cells (LSC). Recent work has uncovered considerable subclonal heterogeneity of prel-SC in MDS and AML and has indicated that stem cell subclonal complexity plays a key role in pathogenesis, progression, and therapeutic resistance. However, the molecular and cellular mechanisms governing these processes are still largely unknown.
Transcription factors (TF) have long been recognized as critical regulators of normal and malignant hematopoiesis. Specifically, in MDS and AML, transcriptional dysregulation is key to confer the pathognomonic features of cellular dysplasia and a myeloid differentiation block. Cell fate and differentiation decisions, as well as the induction of a myeloid bias at the stem cell and multipotent progenitor level, which is one of the earliest cellular properties detected in prel-SC, are governed by transcription factors.
In addition, our recent work has discovered an unexpected degree of transcription dynamics and plasticity in hematopoietic stem and progenitors, and that both transcriptional plasticity and transcriptional memory are dysregulated in prel-SC and LSC.
Our major research questions/goals are to understand stem cell subclonal dynamics and their regulation in the initiation and progression of MDS and AML, to identify and study mechanisms of transcriptional cooperativity in pre-leukemic stem cells and their therapeutic targeting, and to study transcription dynamics and prel-SC fate dysregulation at a single-cell and single-molecule resolution.
To accomplish these goals, we will utilize novel tools for stem cell subclonal analysis in patients, as well as newly developed longitudinal mouse genetic models of prel-SC progression to MDS and AML. In addition, we will leverage recent advances in our ability to directly target key transcription factors by novel first-in-class pharmacological inhibitors, as well as novel experimental tools for the study of transcription dynamics at a single-molecule level in primary stem/progenitor cells from murine models and patients.
Overall, our research will delineate the molecular regulation of pre-cancerous cell states in MDS and AML pathogenesis. This will enable their therapeutic targeting, in addition to the elimination of the fully-transformed leukemic clones. Such an approach holds the promise of achieving lasting remissions and potentially curing MDS and AML.
Our long-term vision is that, once we understand the early transformation-initiating mechanisms in pre-cancerous stem cells, it may even be possible to target such pre-cancerous states before the onset of overt leukemia and thus prevent transformation.
Clinical outcome in MDS and AML has not significantly improved over the past 50 years, and cure rates remain below 15% in the majority of patients (~85%) who are over 55 years of age. Fundamentally novel approaches are urgently needed to improve our understanding of disease pathogenesis and to enable more effective therapeutic intervention.
Evidence over the past 10 years has shown that MDS and AML arise from preleukemic stem cells (prel-SC), preceding the formation of fully transformed leukemia stem cells (LSC). Recent work has uncovered considerable subclonal heterogeneity of prel-SC in MDS and AML and has indicated that stem cell subclonal complexity plays a key role in pathogenesis, progression, and therapeutic resistance. However, the molecular and cellular mechanisms governing these processes are still largely unknown.
Transcription factors (TF) have long been recognized as critical regulators of normal and malignant hematopoiesis. Specifically, in MDS and AML, transcriptional dysregulation is key to confer the pathognomonic features of cellular dysplasia and a myeloid differentiation block. Cell fate and differentiation decisions, as well as the induction of a myeloid bias at the stem cell and multipotent progenitor level, which is one of the earliest cellular properties detected in prel-SC, are governed by transcription factors.
In addition, our recent work has discovered an unexpected degree of transcription dynamics and plasticity in hematopoietic stem and progenitors, and that both transcriptional plasticity and transcriptional memory are dysregulated in prel-SC and LSC.
Our major research questions/goals are to understand stem cell subclonal dynamics and their regulation in the initiation and progression of MDS and AML, to identify and study mechanisms of transcriptional cooperativity in pre-leukemic stem cells and their therapeutic targeting, and to study transcription dynamics and prel-SC fate dysregulation at a single-cell and single-molecule resolution.
To accomplish these goals, we will utilize novel tools for stem cell subclonal analysis in patients, as well as newly developed longitudinal mouse genetic models of prel-SC progression to MDS and AML. In addition, we will leverage recent advances in our ability to directly target key transcription factors by novel first-in-class pharmacological inhibitors, as well as novel experimental tools for the study of transcription dynamics at a single-molecule level in primary stem/progenitor cells from murine models and patients.
Overall, our research will delineate the molecular regulation of pre-cancerous cell states in MDS and AML pathogenesis. This will enable their therapeutic targeting, in addition to the elimination of the fully-transformed leukemic clones. Such an approach holds the promise of achieving lasting remissions and potentially curing MDS and AML.
Our long-term vision is that, once we understand the early transformation-initiating mechanisms in pre-cancerous stem cells, it may even be possible to target such pre-cancerous states before the onset of overt leukemia and thus prevent transformation.
Funding Goals
TO PROVIDE FUNDAMENTAL INFORMATION ON THE CAUSE AND NATURE OF CANCER IN PEOPLE, WITH THE EXPECTATION THAT THIS WILL RESULT IN BETTER METHODS OF PREVENTION, DETECTION AND DIAGNOSIS, AND TREATMENT OF NEOPLASTIC DISEASES. CANCER BIOLOGY RESEARCH INCLUDES THE FOLLOWING RESEARCH PROGRAMS: CANCER CELL BIOLOGY, CANCER IMMUNOLOGY, HEMATOLOGY AND ETIOLOGY, DNA AND CHROMOSOMAL ABERRATIONS, TUMOR BIOLOGY AND METASTASIS, AND STRUCTURAL BIOLOGY AND MOLECULAR APPLICATIONS.
Grant Program (CFDA)
Awarding / Funding Agency
Place of Performance
Bronx,
New York
10461
United States
Geographic Scope
Single Zip Code
Related Opportunity
Analysis Notes
Amendment Since initial award the total obligations have increased 492% from $776,201 to $4,594,192.
Albert Einstein College Of Medicine was awarded
Regulation of Pre-Leukemic Stem Cells for Therapeutic Targeting
Project Grant R35CA253127
worth $4,594,192
from National Cancer Institute in September 2021 with work to be completed primarily in Bronx New York United States.
The grant
has a duration of 7 years and
was awarded through assistance program 93.396 Cancer Biology Research.
The Project Grant was awarded through grant opportunity NCI Outstanding Investigator Award (R35 Clinical Trial Not Allowed).
Status
(Ongoing)
Last Modified 9/24/25
Period of Performance
9/1/21
Start Date
8/31/28
End Date
Funding Split
$4.6M
Federal Obligation
$0.0
Non-Federal Obligation
$4.6M
Total Obligated
Activity Timeline
Transaction History
Modifications to R35CA253127
Additional Detail
Award ID FAIN
R35CA253127
SAI Number
R35CA253127-2477384206
Award ID URI
SAI UNAVAILABLE
Awardee Classifications
Private Institution Of Higher Education
Awarding Office
75NC00 NIH National Cancer Institute
Funding Office
75NC00 NIH National Cancer Institute
Awardee UEI
H6N1ZF5HJ2G3
Awardee CAGE
87UV8
Performance District
NY-14
Senators
Kirsten Gillibrand
Charles Schumer
Charles Schumer
Budget Funding
| Federal Account | Budget Subfunction | Object Class | Total | Percentage |
|---|---|---|---|---|
| National Cancer Institute, National Institutes of Health, Health and Human Services (075-0849) | Health research and training | Grants, subsidies, and contributions (41.0) | $1,854,583 | 100% |
Modified: 9/24/25