R01HL161291
Project Grant
Overview
Grant Description
Developing Gene Therapy Strategies to Treat Alpha Thalassemia - Abstract
Alpha-thalassemia is one of the most common monogenic diseases in the world. While the carrier frequency is highest in those with South East Asian heritage, there is an expanding health burden in the US due to immigration patterns.
Although the most severe form of the disease, A-thalassemia major (ATM), in which all four alpha-globin genes are deleted, was formerly often lethal in utero, numerous patients are now surviving to birth after intrauterine blood transfusions, often with excellent neurologic outcomes. However, these patients have a severe chronic disease that requires monthly transfusions or a stem cell transplantation after birth.
Patients with a three-gene mutation (such as those with hemoglobin H-Constant Spring, HBH-CS) can also have severe disease requiring chronic transfusions. While several gene therapy treatments have been developed for patients with SS-thalassemia, there are no such therapies for patients with the most severe forms of A-thalassemia, indicating a major unmet medical need.
Due to the similarity to SS-thalassemia - lack of functional hemoglobin tetramers and formation of toxic globin aggregates in the absence of the corresponding binding partner - we believe we can adapt gene therapy strategies that have successfully corrected SS-thalassemia in the clinic into analogous approaches for correction of A-thalassemia.
These strategies include:
1) CRISPR/AAV-mediated genome editing to replace a copy of SS-globin with an A-globin transgene (Aim 1, conducted by Drs. Matthew Porteus and Kyle Cromer at Stanford).
2) Lentiviral delivery of an A-globin cassette with erythroid-specific expression (Aim 2, conducted by Dr. Donald Kohn at UCLA).
3) CRISPR-mediated de-repression of -globin, the embryonic precursor to A-globin (Aim 3, conducted by Drs. Tippi Mackenzie and Bruce Conklin at UCSF).
Our multi-institutional team has been actively collaborating to develop these strategies and the preliminary data presented in this grant. All three independent strategies will be developed in vitro and assessed based on their ability to normalize the globin chain imbalance and restore functional hemoglobin tetramers to A-thalassemia-derived HSCs (obtained from patients with ATM and HBH-CS cared for at UCSF).
Furthermore, primary and secondary mouse transplantation experiments will be performed to ensure that edited HSCs retain their ability to engraft and reconstitute hematopoietic lineages in vivo.
The expected outcome of the proposed work is a significant advancement toward a universal cure for A-thalassemia by generating substantial pre-clinical data (for one or more approaches) that may be developed into an IND with the FDA for an innovative first-in-human Phase I/II clinical trial for ex vivo correction of this disease.
Alpha-thalassemia is one of the most common monogenic diseases in the world. While the carrier frequency is highest in those with South East Asian heritage, there is an expanding health burden in the US due to immigration patterns.
Although the most severe form of the disease, A-thalassemia major (ATM), in which all four alpha-globin genes are deleted, was formerly often lethal in utero, numerous patients are now surviving to birth after intrauterine blood transfusions, often with excellent neurologic outcomes. However, these patients have a severe chronic disease that requires monthly transfusions or a stem cell transplantation after birth.
Patients with a three-gene mutation (such as those with hemoglobin H-Constant Spring, HBH-CS) can also have severe disease requiring chronic transfusions. While several gene therapy treatments have been developed for patients with SS-thalassemia, there are no such therapies for patients with the most severe forms of A-thalassemia, indicating a major unmet medical need.
Due to the similarity to SS-thalassemia - lack of functional hemoglobin tetramers and formation of toxic globin aggregates in the absence of the corresponding binding partner - we believe we can adapt gene therapy strategies that have successfully corrected SS-thalassemia in the clinic into analogous approaches for correction of A-thalassemia.
These strategies include:
1) CRISPR/AAV-mediated genome editing to replace a copy of SS-globin with an A-globin transgene (Aim 1, conducted by Drs. Matthew Porteus and Kyle Cromer at Stanford).
2) Lentiviral delivery of an A-globin cassette with erythroid-specific expression (Aim 2, conducted by Dr. Donald Kohn at UCLA).
3) CRISPR-mediated de-repression of -globin, the embryonic precursor to A-globin (Aim 3, conducted by Drs. Tippi Mackenzie and Bruce Conklin at UCSF).
Our multi-institutional team has been actively collaborating to develop these strategies and the preliminary data presented in this grant. All three independent strategies will be developed in vitro and assessed based on their ability to normalize the globin chain imbalance and restore functional hemoglobin tetramers to A-thalassemia-derived HSCs (obtained from patients with ATM and HBH-CS cared for at UCSF).
Furthermore, primary and secondary mouse transplantation experiments will be performed to ensure that edited HSCs retain their ability to engraft and reconstitute hematopoietic lineages in vivo.
The expected outcome of the proposed work is a significant advancement toward a universal cure for A-thalassemia by generating substantial pre-clinical data (for one or more approaches) that may be developed into an IND with the FDA for an innovative first-in-human Phase I/II clinical trial for ex vivo correction of this disease.
Funding Goals
NOT APPLICABLE
Grant Program (CFDA)
Awarding / Funding Agency
Place of Performance
San Francisco,
California
94143
United States
Geographic Scope
Single Zip Code
Related Opportunity
Analysis Notes
Amendment Since initial award the End Date has been extended from 12/31/25 to 02/28/30 and the total obligations have increased 403% from $723,621 to $3,641,716.
San Francisco Regents Of The University Of California was awarded
Gene Therapy Strategies for Alpha Thalassemia Treatment
Project Grant R01HL161291
worth $3,641,716
from National Heart Lung and Blood Institute in January 2021 with work to be completed primarily in San Francisco California United States.
The grant
has a duration of 8 years 1 months and
was awarded through assistance program 93.837 Cardiovascular Diseases Research.
The Project Grant was awarded through grant opportunity NIH Research Project Grant (Parent R01 Clinical Trial Not Allowed).
Status
(Ongoing)
Last Modified 6/22/26
Period of Performance
1/1/22
Start Date
2/28/30
End Date
Funding Split
$3.6M
Federal Obligation
$0.0
Non-Federal Obligation
$3.6M
Total Obligated
Activity Timeline
Transaction History
Modifications to R01HL161291
Additional Detail
Award ID FAIN
R01HL161291
SAI Number
R01HL161291-3104937842
Award ID URI
SAI UNAVAILABLE
Awardee Classifications
Public/State Controlled Institution Of Higher Education
Awarding Office
75NH00 NIH National Heart, Lung, and Blood Institute
Funding Office
75NH00 NIH National Heart, Lung, and Blood Institute
Awardee UEI
KMH5K9V7S518
Awardee CAGE
4B560
Performance District
CA-11
Senators
Dianne Feinstein
Alejandro Padilla
Alejandro Padilla
Budget Funding
| Federal Account | Budget Subfunction | Object Class | Total | Percentage |
|---|---|---|---|---|
| National Heart, Lung, and Blood Institute, National Institutes of Health, Health and Human Services (075-0872) | Health research and training | Grants, subsidies, and contributions (41.0) | $1,434,596 | 100% |
Modified: 6/22/26