R01HL160028
Project Grant
Overview
Grant Description
Mechanobiology of Cardiac Outflow Tract Morphogenesis - Proper growth, septation, and maturation of the cardiac outflow tract (OFT) into valved aortic and pulmonary outlets are essential for oxygenated circulation after birth.
1-2% of live births and up to 30% of pre-term fetal deaths have congenital heart defects, many of which affect the remodeling of the valvuloseptal primordial tissues, called the proximal and distal outflow cushions. Despite much effort uncovering the genetic basis of early OFT cushion formation, this understanding has not explained the clinically relevant phases of growth, condensation, and elongation into valves and septa.
One reason for this appears to be the domination of conditional and collective signaling mechanisms that are well accessible by genetic approaches. Mechanical forces (shear stress, pressure, tension) are ever present during this complex period of OFT growth and remodeling, but to date no studies have investigated these key interactions, especially for their contributions to OFT defects.
We believe that clinically relevant OFT remodeling arises from improper cushion endocardial and/or mesenchymal sensation of and/or response to their local mechanical environment, which in turn drives the incorrect signaling programs.
The Butcher Lab has pioneered innovative technology:
1) To quantify local in vivo mechanical forces within this OFT region and register them with local in situ gene/protein expression,
2) To non-invasively visualize and precisely ablate intracardiac tissues without collateral damage in vivo, and
3) To directly test mechanobiological mechanisms of endocardial cushion growth and remodeling ex vivo.
The preliminary data in this proposal present evidence of two mechanoregulated molecular switches that potentiate between OFT cushion proliferation and differentiation, which motivates the novel hypothesis that local mechanosensation operates molecular switches to control sizing, shape, and stratification of the outflow valves and septa.
Aim 1 will implement innovative non-invasive laser photoablations of the formed proximal or distal cushions of the avian OFT to create genetically unbiased clinically relevant outflow tract malformations. We will then quantitatively analyze and register their hemodynamic, morphological, and phenotypic changes. We will further apply novel deconvolution integration of single-cell RNA sequencing (SC-SEQ) and spatially resolved transcriptomics (SLIDE-SEQ) to reveal unprecedented spatio-temporal resolution of the cellular course of malformation and elaborate how known and newly discovered molecular regulatory programs associate with local mechanical stress changes.
Aim 2 will test the mechanistic causality of the mechanotransduction-operated molecular switches in the OFT cushion endocardium via shear stress patterns.
Aim 3 will test the operation of different mechanobiological switches in cushion mesenchyme via tension/compression using high-throughput ex vivo organ cultures.
The findings from these studies will substantially advance our understanding of mechanoregulation and conditional signaling in outflow tract valvuloseptal maturation, paving the way for strategies to manipulate such signaling programs to reduce or even rescue congenital heart defect severity in utero.
1-2% of live births and up to 30% of pre-term fetal deaths have congenital heart defects, many of which affect the remodeling of the valvuloseptal primordial tissues, called the proximal and distal outflow cushions. Despite much effort uncovering the genetic basis of early OFT cushion formation, this understanding has not explained the clinically relevant phases of growth, condensation, and elongation into valves and septa.
One reason for this appears to be the domination of conditional and collective signaling mechanisms that are well accessible by genetic approaches. Mechanical forces (shear stress, pressure, tension) are ever present during this complex period of OFT growth and remodeling, but to date no studies have investigated these key interactions, especially for their contributions to OFT defects.
We believe that clinically relevant OFT remodeling arises from improper cushion endocardial and/or mesenchymal sensation of and/or response to their local mechanical environment, which in turn drives the incorrect signaling programs.
The Butcher Lab has pioneered innovative technology:
1) To quantify local in vivo mechanical forces within this OFT region and register them with local in situ gene/protein expression,
2) To non-invasively visualize and precisely ablate intracardiac tissues without collateral damage in vivo, and
3) To directly test mechanobiological mechanisms of endocardial cushion growth and remodeling ex vivo.
The preliminary data in this proposal present evidence of two mechanoregulated molecular switches that potentiate between OFT cushion proliferation and differentiation, which motivates the novel hypothesis that local mechanosensation operates molecular switches to control sizing, shape, and stratification of the outflow valves and septa.
Aim 1 will implement innovative non-invasive laser photoablations of the formed proximal or distal cushions of the avian OFT to create genetically unbiased clinically relevant outflow tract malformations. We will then quantitatively analyze and register their hemodynamic, morphological, and phenotypic changes. We will further apply novel deconvolution integration of single-cell RNA sequencing (SC-SEQ) and spatially resolved transcriptomics (SLIDE-SEQ) to reveal unprecedented spatio-temporal resolution of the cellular course of malformation and elaborate how known and newly discovered molecular regulatory programs associate with local mechanical stress changes.
Aim 2 will test the mechanistic causality of the mechanotransduction-operated molecular switches in the OFT cushion endocardium via shear stress patterns.
Aim 3 will test the operation of different mechanobiological switches in cushion mesenchyme via tension/compression using high-throughput ex vivo organ cultures.
The findings from these studies will substantially advance our understanding of mechanoregulation and conditional signaling in outflow tract valvuloseptal maturation, paving the way for strategies to manipulate such signaling programs to reduce or even rescue congenital heart defect severity in utero.
Awardee
Funding Goals
TO FOSTER HEART AND VASCULAR RESEARCH IN THE BASIC, TRANSLATIONAL, CLINICAL AND POPULATION SCIENCES, AND TO FOSTER TRAINING TO BUILD TALENTED YOUNG INVESTIGATORS IN THESE AREAS, FUNDED THROUGH COMPETITIVE RESEARCH TRAINING GRANTS. SMALL BUSINESS INNOVATION RESEARCH (SBIR) PROGRAM: TO STIMULATE TECHNOLOGICAL INNOVATION, USE SMALL BUSINESS TO MEET FEDERAL RESEARCH AND DEVELOPMENT NEEDS, FOSTER AND ENCOURAGE PARTICIPATION IN INNOVATION AND ENTREPRENEURSHIP BY SOCIALLY AND ECONOMICALLY DISADVANTAGED PERSONS, AND INCREASE PRIVATE-SECTOR COMMERCIALIZATION OF INNOVATIONS DERIVED FROM FEDERAL RESEARCH AND DEVELOPMENT FUNDING. SMALL BUSINESS TECHNOLOGY TRANSFER (STTR) PROGRAM: TO STIMULATE TECHNOLOGICAL INNOVATION, FOSTER TECHNOLOGY TRANSFER THROUGH COOPERATIVE R&D BETWEEN SMALL BUSINESSES AND RESEARCH INSTITUTIONS, AND INCREASE PRIVATE SECTOR COMMERCIALIZATION OF INNOVATIONS DERIVED FROM FEDERAL R&D.
Grant Program (CFDA)
Awarding / Funding Agency
Place of Performance
Ithaca,
New York
14850
United States
Geographic Scope
Single Zip Code
Related Opportunity
Analysis Notes
Amendment Since initial award the total obligations have increased 323% from $725,112 to $3,068,575.
Cornell University was awarded
Cardiac OFT Mechanobiology for Congenital Heart Defects
Project Grant R01HL160028
worth $3,068,575
from National Heart Lung and Blood Institute in March 2022 with work to be completed primarily in Ithaca New York United States.
The grant
has a duration of 4 years and
was awarded through assistance program 93.837 Cardiovascular Diseases Research.
The Project Grant was awarded through grant opportunity NIH Research Project Grant (Parent R01 Clinical Trial Not Allowed).
Status
(Ongoing)
Last Modified 8/20/25
Period of Performance
3/15/22
Start Date
2/28/26
End Date
Funding Split
$3.1M
Federal Obligation
$0.0
Non-Federal Obligation
$3.1M
Total Obligated
Activity Timeline
Transaction History
Modifications to R01HL160028
Additional Detail
Award ID FAIN
R01HL160028
SAI Number
R01HL160028-135624827
Award ID URI
SAI UNAVAILABLE
Awardee Classifications
Private Institution Of Higher Education
Awarding Office
75NH00 NIH National Heart, Lung, and Blood Institute
Funding Office
75NH00 NIH National Heart, Lung, and Blood Institute
Awardee UEI
G56PUALJ3KT5
Awardee CAGE
4B578
Performance District
NY-19
Senators
Kirsten Gillibrand
Charles Schumer
Charles Schumer
Budget Funding
Federal Account | Budget Subfunction | Object Class | Total | Percentage |
---|---|---|---|---|
National Heart, Lung, and Blood Institute, National Institutes of Health, Health and Human Services (075-0872) | Health research and training | Grants, subsidies, and contributions (41.0) | $1,665,929 | 100% |
Modified: 8/20/25