R01CA249678
Project Grant
Overview
Grant Description
Biology of R-Spondin-Induced Sensitization to Asparaginase in Colorectal Cancer - Abstract
Colorectal cancer (CRC) is the second-leading cause of cancer deaths in the US, and unlike many other tumor types, there are no known effective therapies targeting dominant oncogenic drivers.
Almost all CRCs have mutations that activate canonical Wnt/β-catenin signaling, but direct inhibition of β-catenin is difficult, and blocking Wnt ligand activity leads to significant on-target bone toxicity. Thus, while targeting Wnt directly is challenging, aberrant Wnt pathway activation may induce tumor-specific vulnerabilities that can be exploited for CRC therapy.
Using a genome-wide genetic screen, we found that Wnt activation induces profound sensitization to therapeutic asparagine depletion using asparaginase in drug-resistant leukemias. This effect is dependent on Wnt-induced inhibition of GSK3, but is independent of APC or β-catenin. Instead, asparaginase sensitization is mediated by Wnt-induced inhibition of GSK3-dependent protein degradation, a catabolic source of amino acids required for asparaginase resistance.
CRC provides a unique context in which to test predictions from our model because these tumors almost all have mutations that activate Wnt/β-catenin, but these can function either upstream or downstream of GSK3. Using human CRC cell lines and genetically engineered mouse intestinal organoids, we found that asparaginase had little effect on CRCs with mutations of the downstream Wnt factor APC but was profoundly toxic to cases with R-Spondin translocations, which activate Wnt signaling via ligand-induced inhibition of GSK3 and thus inhibit GSK3-dependent protein degradation. Importantly, this approach has little detectable toxicity to normal intestinal or epithelial cells. This suggests that this approach has a potent therapeutic index that could transform clinical outcomes for the thousands of patients who die of CRC every year, and a clinical trial based on these data is under development.
However, we do not understand key aspects of the biology underlying this RSPO/Wnt-induced therapeutic vulnerability. Defining the precise molecular events that dictate RSPO/Wnt-induced asparaginase sensitivity is critical for prospectively identifying clinical responders, designing rational approaches to improve therapeutic response, and overcoming treatment resistance. These knowledge gaps will be addressed in the following aims:
1) Determine how RSPO ligands induce sensitization to asparaginase.
2) Investigate the role of GSK3A body formation as a cellular response to asparagine starvation.
3) Determine the role of oncogenic KRAS and TP53 mutations in therapeutic response of RSPO fusion CRC to asparaginase.
This proposal is expected to provide fundamental insights into the amino acid starvation response and its impairment by aberrant Wnt signaling, cellular processes fundamental to metazoan life whose molecular basis and therapeutic exploitation remain poorly understood. Given our highly complementary expertise in asparaginase biology and Wnt signaling, this MPI team is uniquely poised to translate these advances into highly innovative therapeutic interventions.
Colorectal cancer (CRC) is the second-leading cause of cancer deaths in the US, and unlike many other tumor types, there are no known effective therapies targeting dominant oncogenic drivers.
Almost all CRCs have mutations that activate canonical Wnt/β-catenin signaling, but direct inhibition of β-catenin is difficult, and blocking Wnt ligand activity leads to significant on-target bone toxicity. Thus, while targeting Wnt directly is challenging, aberrant Wnt pathway activation may induce tumor-specific vulnerabilities that can be exploited for CRC therapy.
Using a genome-wide genetic screen, we found that Wnt activation induces profound sensitization to therapeutic asparagine depletion using asparaginase in drug-resistant leukemias. This effect is dependent on Wnt-induced inhibition of GSK3, but is independent of APC or β-catenin. Instead, asparaginase sensitization is mediated by Wnt-induced inhibition of GSK3-dependent protein degradation, a catabolic source of amino acids required for asparaginase resistance.
CRC provides a unique context in which to test predictions from our model because these tumors almost all have mutations that activate Wnt/β-catenin, but these can function either upstream or downstream of GSK3. Using human CRC cell lines and genetically engineered mouse intestinal organoids, we found that asparaginase had little effect on CRCs with mutations of the downstream Wnt factor APC but was profoundly toxic to cases with R-Spondin translocations, which activate Wnt signaling via ligand-induced inhibition of GSK3 and thus inhibit GSK3-dependent protein degradation. Importantly, this approach has little detectable toxicity to normal intestinal or epithelial cells. This suggests that this approach has a potent therapeutic index that could transform clinical outcomes for the thousands of patients who die of CRC every year, and a clinical trial based on these data is under development.
However, we do not understand key aspects of the biology underlying this RSPO/Wnt-induced therapeutic vulnerability. Defining the precise molecular events that dictate RSPO/Wnt-induced asparaginase sensitivity is critical for prospectively identifying clinical responders, designing rational approaches to improve therapeutic response, and overcoming treatment resistance. These knowledge gaps will be addressed in the following aims:
1) Determine how RSPO ligands induce sensitization to asparaginase.
2) Investigate the role of GSK3A body formation as a cellular response to asparagine starvation.
3) Determine the role of oncogenic KRAS and TP53 mutations in therapeutic response of RSPO fusion CRC to asparaginase.
This proposal is expected to provide fundamental insights into the amino acid starvation response and its impairment by aberrant Wnt signaling, cellular processes fundamental to metazoan life whose molecular basis and therapeutic exploitation remain poorly understood. Given our highly complementary expertise in asparaginase biology and Wnt signaling, this MPI team is uniquely poised to translate these advances into highly innovative therapeutic interventions.
Funding Goals
TO PROVIDE FUNDAMENTAL INFORMATION ON THE CAUSE AND NATURE OF CANCER IN PEOPLE, WITH THE EXPECTATION THAT THIS WILL RESULT IN BETTER METHODS OF PREVENTION, DETECTION AND DIAGNOSIS, AND TREATMENT OF NEOPLASTIC DISEASES. CANCER BIOLOGY RESEARCH INCLUDES THE FOLLOWING RESEARCH PROGRAMS: CANCER CELL BIOLOGY, CANCER IMMUNOLOGY, HEMATOLOGY AND ETIOLOGY, DNA AND CHROMOSOMAL ABERRATIONS, TUMOR BIOLOGY AND METASTASIS, AND STRUCTURAL BIOLOGY AND MOLECULAR APPLICATIONS.
Grant Program (CFDA)
Awarding / Funding Agency
Place of Performance
Memphis,
Tennessee
38105
United States
Geographic Scope
Single Zip Code
Related Opportunity
Analysis Notes
Amendment Since initial award the total obligations have increased 387% from $651,421 to $3,172,465.
St. Jude Children's Research Hospital was awarded
RSPO-Induced Sensitization to Asparaginase in Colorectal Cancer - Proposal
Project Grant R01CA249678
worth $3,172,465
from National Cancer Institute in August 2021 with work to be completed primarily in Memphis Tennessee United States.
The grant
has a duration of 5 years and
was awarded through assistance program 93.396 Cancer Biology Research.
The Project Grant was awarded through grant opportunity NIH Research Project Grant (Parent R01 Clinical Trial Not Allowed).
Status
(Ongoing)
Last Modified 8/20/25
Period of Performance
8/1/21
Start Date
7/31/26
End Date
Funding Split
$3.2M
Federal Obligation
$0.0
Non-Federal Obligation
$3.2M
Total Obligated
Activity Timeline
Subgrant Awards
Disclosed subgrants for R01CA249678
Transaction History
Modifications to R01CA249678
Additional Detail
Award ID FAIN
R01CA249678
SAI Number
R01CA249678-4037755714
Award ID URI
SAI UNAVAILABLE
Awardee Classifications
Nonprofit With 501(c)(3) IRS Status (Other Than An Institution Of Higher Education)
Awarding Office
75NC00 NIH National Cancer Institute
Funding Office
75NC00 NIH National Cancer Institute
Awardee UEI
JL4JHE9SDRR3
Awardee CAGE
0L0C5
Performance District
TN-09
Senators
Marsha Blackburn
Bill Hagerty
Bill Hagerty
Budget Funding
Federal Account | Budget Subfunction | Object Class | Total | Percentage |
---|---|---|---|---|
National Cancer Institute, National Institutes of Health, Health and Human Services (075-0849) | Health research and training | Grants, subsidies, and contributions (41.0) | $1,238,516 | 100% |
Modified: 8/20/25