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R01AI151290

Project Grant

Overview

Grant Description
Role of VZV Latency Transcript (VLT) and ORF63 in Latency and Reactivation

Varicella-zoster virus (VZV), a human alphaherpesvirus (AHV), establishes lifelong latent infection in ganglionic neurons of over 90% of humans worldwide. It reactivates to cause herpes zoster (HZ), which is often followed by debilitating pain and life-changing complications. How VZV maintains latency remains unclear. Despite the availability of two FDA-approved HZ vaccines, HZ will remain a common and clinically important disease for many years. The VZV latent state cannot yet be targeted, and the triggers of reactivation are not clear. There is no animal model to study human VZV latency/reactivation.

We argue that better knowledge of VZV latency and reactivation will establish a firm basis for new anti-VZV strategies to reduce the HZ burden. Our group has pioneered the study of VZV latency by analyzing naturally VZV-infected human trigeminal ganglia (TG) and human stem cell-derived cultured (HESC) neuron models. We have now identified novel spliced VZV RNAs in human TG termed the VZV latency-associated transcripts (VLT). Remarkably, these are positionally conserved to latent RNAs made by other neurotropic AHVs and are antisense to the VZV transactivator, open reading frame 61 (ORF61, ortholog of HSV ICP0). However, VZV VLTS are different in that they can encode proteins of unknown function that also link to ORF63, an immediate-early protein that regulates VZV gene expression.

Our overarching hypothesis is that VLT is important for the establishment and/or maintenance of VZV latency, while VLT-ORF63 is important for reactivation from latency. Our three specific aims are designed to address the VZV VLT and ORF63 loci in depth, using both cadaveric human TG and cultured neuron models of VZV latency and reactivation.

In Aim 1, we will perform in-depth in situ analyses of latently VZV-infected human TG and VZV-infected cultured HESC neurons to determine the specific human neuron subtypes that host VZV latency and support reactivation. This will establish a basis for neuron-specific targeting of the latent state.

Aim 2 will genetically dissect components of VLT and its proteins with defined recombinant viruses to determine how each contributes to lytic, latent, and reactivated VZV infections.

Aim 3 will determine the changes in molecular chromatin occurring at the VLT and ORF63 loci as VZV transitions from latency to reactivation, focusing on CTCF binding, histone modifications, and resultant transcription on VZV genomes.

This application represents the combination of unique expertise from three VZV labs that will share complementary materials, tools, and techniques to resolve how the RNAs, proteins, and chromatin changes of the VLT locus contribute to virus growth, latency, and reactivation. Successful completion of our proposal will provide insight into molecular mechanisms that regulate VZV latency and reactivation. This will provide leads towards the development of novel intervention strategies that effectively target latent VZV and consequently the burden of HZ disease.
Funding Goals
TO ASSIST PUBLIC AND PRIVATE NONPROFIT INSTITUTIONS AND INDIVIDUALS TO ESTABLISH, EXPAND AND IMPROVE BIOMEDICAL RESEARCH AND RESEARCH TRAINING IN INFECTIOUS DISEASES AND RELATED AREAS, TO CONDUCT DEVELOPMENTAL RESEARCH, TO PRODUCE AND TEST RESEARCH MATERIALS. TO ASSIST PUBLIC, PRIVATE AND COMMERCIAL INSTITUTIONS TO CONDUCT DEVELOPMENTAL RESEARCH, TO PRODUCE AND TEST RESEARCH MATERIALS, TO PROVIDE RESEARCH SERVICES AS REQUIRED BY THE AGENCY FOR PROGRAMS IN INFECTIOUS DISEASES, AND CONTROLLING DISEASE CAUSED BY INFECTIOUS OR PARASITIC AGENTS, ALLERGIC AND IMMUNOLOGIC DISEASES AND RELATED AREAS. PROJECTS RANGE FROM STUDIES OF MICROBIAL PHYSIOLOGY AND ANTIGENIC STRUCTURE TO COLLABORATIVE TRIALS OF EXPERIMENTAL DRUGS AND VACCINES, MECHANISMS OF RESISTANCE TO ANTIBIOTICS AS WELL AS RESEARCH DEALING WITH EPIDEMIOLOGICAL OBSERVATIONS IN HOSPITALIZED PATIENTS OR COMMUNITY POPULATIONS AND PROGRESS IN ALLERGIC AND IMMUNOLOGIC DISEASES. BECAUSE OF THIS DUAL FOCUS, THE PROGRAM ENCOMPASSES BOTH BASIC RESEARCH AND CLINICAL RESEARCH. SMALL BUSINESS INNOVATION RESEARCH (SBIR) PROGRAM EXPANDS AND IMPROVES PRIVATE SECTOR PARTICIPATION IN BIOMEDICAL RESEARCH. THE SBIR PROGRAM INTENDS TO INCREASE AND FACILITATE PRIVATE SECTOR COMMERCIALIZATION OF INNOVATIONS DERIVED FROM FEDERAL RESEARCH AND DEVELOPMENT, TO INCREASE SMALL BUSINESS PARTICIPATION IN FEDERAL RESEARCH AND DEVELOPMENT, AND TO FOSTER AND ENCOURAGE PARTICIPATION OF SOCIALLY AND ECONOMICALLY DISADVANTAGED SMALL BUSINESS CONCERNS AND WOMEN-OWNED SMALL BUSINESS CONCERNS IN TECHNOLOGICAL INNOVATION. THE SMALL BUSINESS TECHNOLOGY TRANSFER (STTR) PROGRAM STIMULATES AND FOSTERS SCIENTIFIC AND TECHNOLOGICAL INNOVATION THROUGH COOPERATIVE RESEARCH AND DEVELOPMENT CARRIED OUT BETWEEN SMALL BUSINESS CONCERNS AND RESEARCH INSTITUTIONS, TO FOSTER TECHNOLOGY TRANSFER BETWEEN SMALL BUSINESS CONCERNS AND RESEARCH INSTITUTIONS, TO INCREASE PRIVATE SECTOR COMMERCIALIZATION OF INNOVATIONS DERIVED FROM FEDERAL RESEARCH AND DEVELOPMENT, AND TO FOSTER AND ENCOURAGE PARTICIPATION OF SOCIALLY AND ECONOMICALLY DISADVANTAGED SMALL BUSINESS CONCERNS AND WOMEN-OWNED SMALL BUSINESS CONCERNS IN TECHNOLOGICAL INNOVATION. RESEARCH CAREER DEVELOPMENT AWARDS SUPPORT THE DEVELOPMENT OF SCIENTISTS DURING THE FORMATIVE STAGES OF THEIR CAREERS. INDIVIDUAL NATIONAL RESEARCH SERVICE AWARDS (NRSAS) ARE MADE DIRECTLY TO APPROVE APPLICANTS FOR RESEARCH TRAINING IN SPECIFIED BIOMEDICAL SHORTAGE AREAS. IN ADDITION, INSTITUTIONAL NATIONAL RESEARCH SERVICE AWARDS ARE MADE TO ENABLE INSTITUTIONS TO SELECT AND MAKE AWARDS TO INDIVIDUALS TO RECEIVE TRAINING UNDER THE AEGIS OF THEIR INSTITUTIONAL PROGRAM.
Place of Performance
Pittsburgh, Pennsylvania 152133203 United States
Geographic Scope
Single Zip Code
Analysis Notes
Amendment Since initial award the total obligations have increased 424% from $666,635 to $3,491,905.
University Of Pittsburgh - Of The Commonwealth System Of Higher Education was awarded VZV Latency Transcript (VLT) ORF63: Understanding Latency Reactivation Project Grant R01AI151290 worth $3,491,905 from the National Institute of Allergy and Infectious Diseases in November 2020 with work to be completed primarily in Pittsburgh Pennsylvania United States. The grant has a duration of 5 years and was awarded through assistance program 93.855 Allergy and Infectious Diseases Research. The Project Grant was awarded through grant opportunity Research Project Grant (Parent R01 Clinical Trial Not Allowed).

Status
(Ongoing)

Last Modified 1/21/25

Period of Performance
11/17/20
Start Date
10/31/25
End Date
96.0% Complete

Funding Split
$3.5M
Federal Obligation
$0.0
Non-Federal Obligation
$3.5M
Total Obligated
100.0% Federal Funding
0.0% Non-Federal Funding

Activity Timeline

Interactive chart of timeline of amendments to R01AI151290

Subgrant Awards

Disclosed subgrants for R01AI151290

Transaction History

Modifications to R01AI151290

Additional Detail

Award ID FAIN
R01AI151290
SAI Number
R01AI151290-2313469848
Award ID URI
SAI UNAVAILABLE
Awardee Classifications
Other
Awarding Office
75NM00 NIH NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES
Funding Office
75NM00 NIH NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES
Awardee UEI
MKAGLD59JRL1
Awardee CAGE
1DQV3
Performance District
PA-12
Senators
Robert Casey
John Fetterman

Budget Funding

Federal Account Budget Subfunction Object Class Total Percentage
National Institute of Allergy and Infectious Diseases, National Institutes of Health, Health and Human Services (075-0885) Health research and training Grants, subsidies, and contributions (41.0) $1,442,261 100%
Modified: 1/21/25